Pro Tools has specific technical, hardware, and software requirements that need to be met in order for it to work properly. If your drive is too small, too slow, or fragmented, you may encounter problems playing back or recording tracks saved to the disk. In order to maintain an efficient record and playback with Pro Tools, you may consider a dedicated drive for the audio files.
In general, Mac users need at least 10G of storage with a fast operating speed, and 384MB of RAM. Powerbook users should consider defragmenting and initializing their drives before recording. If you are using FireWire, your operating speed should be at least 7200RPM. If you are using iSCSI, you should should be at 10,000RPM. If your system meets or exceeds these requirements, then any drive problems are likely able to be corrected with defragmenting and reinitializing the drive.
The most common problems that result from slow or fragmented drives are errors in efficiency during playback, or problems in saving tracks onto the disk. Be sure to keep an eye out for any error messages related to the drive as well, and check Digidesign's Answerbase online or in your Digidesign folder on your hard drive. This may help you narrow down the specific type of issue you're experiencing, and give you some things to try out that may fix the drive problems in Pro Tools.
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